J3_9HMW_009

3D structure

PDB id

9HMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

CGAUG*UGG*CUGUG

Length

13 nucleotides

Bulged bases

9HMW|1|A|G|437, 9HMW|1|A|U|632

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HMW|1|A|C|436
9HMW|1|A|G|437
9HMW|1|A|A|438
9HMW|1|A|U|439
9HMW|1|A|G|440
*
9HMW|1|A|U|495
9HMW|1|A|G|496
9HMW|1|A|G|497
*
9HMW|1|A|C|629
9HMW|1|A|U|630
9HMW|1|A|G|631
9HMW|1|A|U|632
9HMW|1|A|G|633

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain AQ

Large ribosomal subunit protein eL28z

Chain AV

Large ribosomal subunit protein eL32z

Chain AW

Large ribosomal subunit protein eL33y