J3_9HMW_012
3D structure
- PDB id
- 9HMW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.25 Å
Loop
- Sequence
- UGA(A2M)C(PSU)A*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 9HMW|1|A|A2M|826, 9HMW|1|A|G|933, 9HMW|1|A|A|934
- QA status
- Modified nucleotides: A2M, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9HMW|1|A|U|823
9HMW|1|A|G|824
9HMW|1|A|A|825
9HMW|1|A|A2M|826
9HMW|1|A|C|827
9HMW|1|A|PSU|828
9HMW|1|A|A|829
*
9HMW|1|A|U|914
9HMW|1|A|A|915
9HMW|1|A|G|916
*
9HMW|1|A|C|932
9HMW|1|A|G|933
9HMW|1|A|A|934
9HMW|1|A|A|935
Current chains
- Chain A
- Ribosomal RNA 25S
Nearby chains
- Chain AY
- Large ribosomal subunit protein eL37z
- Chain BA
- Large ribosomal subunit protein eL39z/eL39x
- Chain BQ
- Large ribosomal subunit protein uL2z
- Chain BT
- Large ribosomal subunit protein uL4z
- Chain Ea
- Large ribosomal subunit protein eL15z
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