J3_9HMW_015

3D structure

PDB id

9HMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

CGAAGAG*CAA*UCUG

Length

14 nucleotides

Bulged bases

9HMW|1|A|A|1491, 9HMW|1|A|A|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HMW|1|A|C|1488
9HMW|1|A|G|1489
9HMW|1|A|A|1490
9HMW|1|A|A|1491
9HMW|1|A|G|1492
9HMW|1|A|A|1493
9HMW|1|A|G|1494
*
9HMW|1|A|C|1859
9HMW|1|A|A|1860
9HMW|1|A|A|1861
*
9HMW|1|A|U|1873
9HMW|1|A|C|1874
9HMW|1|A|U|1875
9HMW|1|A|G|1876

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain AK

Large ribosomal subunit protein eL19x

Chain Fa

Large ribosomal subunit protein eL34z