J3_9HMW_016

3D structure

PDB id

9HMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

GAAA*UCAUAA(OMC)*GUC

Length

14 nucleotides

Bulged bases

9HMW|1|A|U|1842, 9HMW|1|A|A|1843

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HMW|1|A|G|1497
9HMW|1|A|A|1498
9HMW|1|A|A|1499
9HMW|1|A|A|1500
*
9HMW|1|A|U|1839
9HMW|1|A|C|1840
9HMW|1|A|A|1841
9HMW|1|A|U|1842
9HMW|1|A|A|1843
9HMW|1|A|A|1844
9HMW|1|A|OMC|1845
*
9HMW|1|A|G|1854
9HMW|1|A|U|1855
9HMW|1|A|C|1856

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain 3

5.8S ribosomal RNA; 5.8S rRNA

Chain AY

Large ribosomal subunit protein eL37z

Chain BA

Large ribosomal subunit protein eL39z/eL39x

Chain Fa

Large ribosomal subunit protein eL34z