J3_9HMW_021

3D structure

PDB id

9HMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

C(PSU)UUG*CUUAC*GGACAUUG

Length

18 nucleotides

Bulged bases

9HMW|1|A|U|2512

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HMW|1|A|C|2429
9HMW|1|A|PSU|2430
9HMW|1|A|U|2431
9HMW|1|A|U|2432
9HMW|1|A|G|2433
*
9HMW|1|A|C|2510
9HMW|1|A|U|2511
9HMW|1|A|U|2512
9HMW|1|A|A|2513
9HMW|1|A|C|2514
*
9HMW|1|A|G|2590
9HMW|1|A|G|2591
9HMW|1|A|A|2592
9HMW|1|A|C|2593
9HMW|1|A|A|2594
9HMW|1|A|U|2595
9HMW|1|A|U|2596
9HMW|1|A|G|2597

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain AX

Large ribosomal subunit protein eL36y

Chain BG

Large ribosomal subunit protein eL8y

Chain BQ

Large ribosomal subunit protein uL2z

Chain Ea

Large ribosomal subunit protein eL15z