Loop J3_9HMW

3D structure

PDB id: 9HMW (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.25 Å

Loop

Sequence: GAUUGCCG*CACGUGUCGUUG*CUUGAAUUAUAAUUACCACC
Length: 40 nucleotides
Bulged bases: 9HMW|1|A|U|3166, 9HMW|1|A|G|3167, 9HMW|1|A|U|3206, 9HMW|1|A|A|3254, 9HMW|1|A|U|3256, 9HMW|1|A|U|3258, 9HMW|1|A|U|3262
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9HMW|1|A|G|3163
9HMW|1|A|A|3164
9HMW|1|A|U|3165
9HMW|1|A|U|3166
9HMW|1|A|G|3167
9HMW|1|A|C|3168
9HMW|1|A|C|3169
9HMW|1|A|G|3170
*
9HMW|1|A|C|3200
9HMW|1|A|A|3201
9HMW|1|A|C|3202
9HMW|1|A|G|3203
9HMW|1|A|U|3204
9HMW|1|A|G|3205
9HMW|1|A|U|3206
9HMW|1|A|C|3207
9HMW|1|A|G|3208
9HMW|1|A|U|3209
9HMW|1|A|U|3210
9HMW|1|A|G|3211
*
9HMW|1|A|C|3249
9HMW|1|A|U|3250
9HMW|1|A|U|3251
9HMW|1|A|G|3252
9HMW|1|A|A|3253
9HMW|1|A|A|3254
9HMW|1|A|U|3255
9HMW|1|A|U|3256
9HMW|1|A|A|3257
9HMW|1|A|U|3258
9HMW|1|A|A|3259
9HMW|1|A|A|3260
9HMW|1|A|U|3261
9HMW|1|A|U|3262
9HMW|1|A|A|3263
9HMW|1|A|C|3264
9HMW|1|A|C|3265
9HMW|1|A|A|3266
9HMW|1|A|C|3267
9HMW|1|A|C|3268

Current chains

Chain A: Ribosomal RNA 25S

Nearby chains

Chain AH: Large ribosomal subunit protein eL14y
Chain AW: Large ribosomal subunit protein eL33y
Chain BF: Large ribosomal subunit protein eL6y
Chain BH: Large ribosomal subunit protein uL13y

J3_9HMW_025