J3_9HMW_028

3D structure

PDB id

9HMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

AG*CGC(A2M)AAU*(A2M)G(PSU)

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HMW|1|h1|A|41
9HMW|1|h1|G|42
*
9HMW|1|h1|C|435
9HMW|1|h1|G|436
9HMW|1|h1|C|437
9HMW|1|h1|A2M|438
9HMW|1|h1|A|439
9HMW|1|h1|A|440
9HMW|1|h1|U|441
*
9HMW|1|h1|A2M|466
9HMW|1|h1|G|467
9HMW|1|h1|PSU|468

Current chains

Chain h1

Ribosomal RNA 18S

Nearby chains

Chain AB

Small ribosomal subunit protein uS4y

Chain Va

Small ribosomal subunit protein uS12y