J3_9HMW_033

3D structure

PDB id

9HMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

CCA*UUAUG*CAAAG

Length

13 nucleotides

Bulged bases

9HMW|1|h1|A|1082, 9HMW|1|h1|A|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HMW|1|h1|C|1038
9HMW|1|h1|C|1039
9HMW|1|h1|A|1040
*
9HMW|1|h1|U|1080
9HMW|1|h1|U|1081
9HMW|1|h1|A|1082
9HMW|1|h1|U|1083
9HMW|1|h1|G|1084
*
9HMW|1|h1|C|1091
9HMW|1|h1|A|1092
9HMW|1|h1|A|1093
9HMW|1|h1|A|1094
9HMW|1|h1|G|1095

Current chains

Chain h1

Ribosomal RNA 18S

Nearby chains

Chain AE

Small ribosomal subunit protein uS8z/uS8w

Chain BW

Small ribosomal subunit protein eS21y

Chain Ma

Small ribosomal subunit protein eS26y

Chain Na

Small ribosomal subunit protein eS27y

Chain Za

Small ribosomal subunit protein uS2z