J3_9HMW_034

3D structure

PDB id

9HMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

CCAG*CUAGUAA*(PSU)GACUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HMW|1|h1|C|1162
9HMW|1|h1|C|1163
9HMW|1|h1|A|1164
9HMW|1|h1|G|1165
*
9HMW|1|h1|C|1583
9HMW|1|h1|U|1584
9HMW|1|h1|A|1585
9HMW|1|h1|G|1586
9HMW|1|h1|U|1587
9HMW|1|h1|A|1588
9HMW|1|h1|A|1589
*
9HMW|1|h1|PSU|1611
9HMW|1|h1|G|1612
9HMW|1|h1|A|1613
9HMW|1|h1|C|1614
9HMW|1|h1|U|1615
9HMW|1|h1|A|1616
9HMW|1|h1|C|1617
9HMW|1|h1|G|1618

Current chains

Chain h1

Ribosomal RNA 18S

Nearby chains

Chain AD

Small ribosomal subunit protein uS7y

Chain AF

Small ribosomal subunit protein uS9z

Chain Oa

Small ribosomal subunit protein eS28x