J3_9HMW_036

3D structure

PDB id

9HMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

C(PSU)UAAUU(PSU)*GGGGAAACU(PSU)AC*GGCCG

Length

25 nucleotides

Bulged bases

9HMW|1|h1|G|1200, 9HMW|1|h1|G|1202, 9HMW|1|h1|A|1204

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HMW|1|h1|C|1181
9HMW|1|h1|PSU|1182
9HMW|1|h1|U|1183
9HMW|1|h1|A|1184
9HMW|1|h1|A|1185
9HMW|1|h1|U|1186
9HMW|1|h1|U|1187
9HMW|1|h1|PSU|1188
*
9HMW|1|h1|G|1199
9HMW|1|h1|G|1200
9HMW|1|h1|G|1201
9HMW|1|h1|G|1202
9HMW|1|h1|A|1203
9HMW|1|h1|A|1204
9HMW|1|h1|A|1205
9HMW|1|h1|C|1206
9HMW|1|h1|U|1207
9HMW|1|h1|PSU|1208
9HMW|1|h1|A|1209
9HMW|1|h1|C|1210
*
9HMW|1|h1|G|1457
9HMW|1|h1|G|1458
9HMW|1|h1|C|1459
9HMW|1|h1|C|1460
9HMW|1|h1|G|1461

Current chains

Chain h1

Ribosomal RNA 18S

Nearby chains

Chain Ba

Small ribosomal subunit protein uS10y

Chain Ca

Small ribosomal subunit protein uS14z/uS14y/uS14x

Chain Wa

Small ribosomal subunit protein uS13z/uS13y/uS13x

Chain Ya

Small ribosomal subunit protein uS19y

Chain i2

Transfer RNA; tRNA