J3_9HMW_037

3D structure

PDB id

9HMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

(OMC)CAGAC*GGGUG*(OMU)UAGAUG

Length

18 nucleotides

Bulged bases

9HMW|1|h1|A|1218, 9HMW|1|h1|G|1448, 9HMW|1|h1|U|1450

QA status

Modified nucleotides: OMC, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HMW|1|h1|OMC|1216
9HMW|1|h1|C|1217
9HMW|1|h1|A|1218
9HMW|1|h1|G|1219
9HMW|1|h1|A|1220
9HMW|1|h1|C|1221
*
9HMW|1|h1|G|1264
9HMW|1|h1|G|1265
9HMW|1|h1|G|1266
9HMW|1|h1|U|1267
9HMW|1|h1|G|1268
*
9HMW|1|h1|OMU|1445
9HMW|1|h1|U|1446
9HMW|1|h1|A|1447
9HMW|1|h1|G|1448
9HMW|1|h1|A|1449
9HMW|1|h1|U|1450
9HMW|1|h1|G|1451

Current chains

Chain h1

Ribosomal RNA 18S

Nearby chains

Chain AI

Small ribosomal subunit protein eS10z

Chain Ca

Small ribosomal subunit protein uS14z/uS14y/uS14x