J3_9HMW_042

3D structure

PDB id

9HMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

CACUG*CGUGAUGG*CG(A2M)G

Length

17 nucleotides

Bulged bases

9HMW|1|h1|U|1476, 9HMW|1|h1|G|1541

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HMW|1|h1|C|1473
9HMW|1|h1|A|1474
9HMW|1|h1|C|1475
9HMW|1|h1|U|1476
9HMW|1|h1|G|1477
*
9HMW|1|h1|C|1535
9HMW|1|h1|G|1536
9HMW|1|h1|U|1537
9HMW|1|h1|G|1538
9HMW|1|h1|A|1539
9HMW|1|h1|U|1540
9HMW|1|h1|G|1541
9HMW|1|h1|G|1542
*
9HMW|1|h1|C|1573
9HMW|1|h1|G|1574
9HMW|1|h1|A2M|1575
9HMW|1|h1|G|1576

Current chains

Chain h1

Ribosomal RNA 18S

Nearby chains

Chain AD

Small ribosomal subunit protein uS7y

Chain BL

Small ribosomal subunit protein eS19x

Chain La

Small ribosomal subunit protein eS25w

Chain Wa

Small ribosomal subunit protein uS13z/uS13y/uS13x