J3_9HQV_002
3D structure
- PDB id
- 9HQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- UUGU*AACAAUUC*GUAAUCUA
- Length
- 20 nucleotides
- Bulged bases
- 9HQV|1|SM|C|39, 9HQV|1|SM|U|43
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9HQV|1|SK|U|82
9HQV|1|SK|U|83
9HQV|1|SK|G|84
9HQV|1|SK|U|85
*
9HQV|1|SM|A|37
9HQV|1|SM|A|38
9HQV|1|SM|C|39
9HQV|1|SM|A|40
9HQV|1|SM|A|41
9HQV|1|SM|U|42
9HQV|1|SM|U|43
9HQV|1|SM|C|44
*
9HQV|1|SM|G|57
9HQV|1|SM|U|58
9HQV|1|SM|A|59
9HQV|1|SM|A|60
9HQV|1|SM|U|61
9HQV|1|SM|C|62
9HQV|1|SM|U|63
9HQV|1|SM|A|64
Current chains
- Chain SK
- SSU-11
- Chain SM
- SSU-13
Nearby chains
- Chain Bi
- us13m
- Chain Bs
- DNA double-strand break repair rad50 ATPase
- Chain SP
- SSU-16
- Chain SQ
- SSU-17
- Chain TP
- tRNA E-site
- Chain UC
- Chain UC
- Chain Ys
- mS135
Coloring options: