J3_9HQV_003
3D structure
- PDB id
- 9HQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- UUUCAUUC*GCUCAAUCUUAC*GGA
- Length
- 23 nucleotides
- Bulged bases
- 9HQV|1|SK|U|105, 9HQV|1|SK|C|106, 9HQV|1|SK|A|107, 9HQV|1|SK|A|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9HQV|1|SK|U|85
9HQV|1|SK|U|86
9HQV|1|SK|U|87
9HQV|1|SK|C|88
9HQV|1|SK|A|89
9HQV|1|SK|U|90
9HQV|1|SK|U|91
9HQV|1|SK|C|92
*
9HQV|1|SK|G|103
9HQV|1|SK|C|104
9HQV|1|SK|U|105
9HQV|1|SK|C|106
9HQV|1|SK|A|107
9HQV|1|SK|A|108
9HQV|1|SK|U|109
9HQV|1|SK|C|110
9HQV|1|SK|U|111
9HQV|1|SK|U|112
9HQV|1|SK|A|113
9HQV|1|SK|C|114
*
9HQV|1|SM|G|35
9HQV|1|SM|G|36
9HQV|1|SM|A|37
Current chains
- Chain SK
- SSU-11
- Chain SM
- SSU-13
Nearby chains
- Chain Be
- Putative ribosomal protein S9
- Chain Bf
- uS10m
- Chain Bj
- Putative ribosomal protein S14
- Chain Bs
- DNA double-strand break repair rad50 ATPase
- Chain Bu
- Small ribosomal subunit protein mS35 mitochondrial conserved domain-containing protein
- Chain SL
- SSU-12
- Chain SP
- SSU-16
- Chain SQ
- SSU-17
- Chain Yp
- mS132
- Chain Ys
- mS135
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