J3_9HUQ_001

3D structure

PDB id

9HUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome with complexed filament nascent chain at length 47, with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GCCGUAG*CGC*GGAAC

Length

15 nucleotides

Bulged bases

9HUQ|1|a|U|14, 9HUQ|1|a|A|108

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HUQ|1|a|G|10
9HUQ|1|a|C|11
9HUQ|1|a|C|12
9HUQ|1|a|G|13
9HUQ|1|a|U|14
9HUQ|1|a|A|15
9HUQ|1|a|G|16
*
9HUQ|1|a|C|68
9HUQ|1|a|G|69
9HUQ|1|a|C|70
*
9HUQ|1|a|G|106
9HUQ|1|a|G|107
9HUQ|1|a|A|108
9HUQ|1|a|A|109
9HUQ|1|a|C|110

Current chains

Chain a

5S rRNA

Nearby chains

Chain b

Large subunit ribosomal RNA; LSU rRNA

Chain o

Large ribosomal subunit protein uL18

Chain w

Large ribosomal subunit protein bL25

Chain y

Large ribosomal subunit protein bL27