J3_9HUQ_019

3D structure

PDB id

9HUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome with complexed filament nascent chain at length 47, with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GAAC*GUUGAU*AAUGAAC

Length

17 nucleotides

Bulged bases

9HUQ|1|b|U|2833, 9HUQ|1|b|A|2835, 9HUQ|1|b|U|2884, 9HUQ|1|b|G|2885

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HUQ|1|b|G|2812
9HUQ|1|b|A|2813
9HUQ|1|b|A|2814
9HUQ|1|b|C|2815
*
9HUQ|1|b|G|2831
9HUQ|1|b|U|2832
9HUQ|1|b|U|2833
9HUQ|1|b|G|2834
9HUQ|1|b|A|2835
9HUQ|1|b|U|2836
*
9HUQ|1|b|A|2882
9HUQ|1|b|A|2883
9HUQ|1|b|U|2884
9HUQ|1|b|G|2885
9HUQ|1|b|A|2886
9HUQ|1|b|A|2887
9HUQ|1|b|C|2888

Current chains

Chain b

23S rRNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL32

Chain d

50S ribosomal protein L3

Chain n

Large ribosomal subunit protein bL17

Chain s

Large ribosomal subunit protein uL22