J3_9HY6_008
3D structure
- PDB id
- 9HY6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome with nascent chain at linker length of 31 amino acids, with mRNA, P-site and A-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CCCAGACAGCCAGGAUG*CAUUUAAAGAAA*UCACUGGUCGAG
- Length
- 41 nucleotides
- Bulged bases
- 9HY6|1|b|A|1046, 9HY6|1|b|C|1053, 9HY6|1|b|A|1057, 9HY6|1|b|A|1103
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9HY6|1|b|C|1043
9HY6|1|b|C|1044
9HY6|1|b|C|1045
9HY6|1|b|A|1046
9HY6|1|b|G|1047
9HY6|1|b|A|1048
9HY6|1|b|C|1049
9HY6|1|b|A|1050
9HY6|1|b|G|1051
9HY6|1|b|C|1052
9HY6|1|b|C|1053
9HY6|1|b|A|1054
9HY6|1|b|G|1055
9HY6|1|b|G|1056
9HY6|1|b|A|1057
9HY6|1|b|U|1058
9HY6|1|b|G|1059
*
9HY6|1|b|C|1079
9HY6|1|b|A|1080
9HY6|1|b|U|1081
9HY6|1|b|U|1082
9HY6|1|b|U|1083
9HY6|1|b|A|1084
9HY6|1|b|A|1085
9HY6|1|b|A|1086
9HY6|1|b|G|1087
9HY6|1|b|A|1088
9HY6|1|b|A|1089
9HY6|1|b|A|1090
*
9HY6|1|b|U|1101
9HY6|1|b|C|1102
9HY6|1|b|A|1103
9HY6|1|b|C|1104
9HY6|1|b|U|1105
9HY6|1|b|G|1106
9HY6|1|b|G|1107
9HY6|1|b|U|1108
9HY6|1|b|C|1109
9HY6|1|b|G|1110
9HY6|1|b|A|1111
9HY6|1|b|G|1112
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 8
- 50S ribosomal protein L36
- Chain g
- Large ribosomal subunit protein uL6
Coloring options: