J3_9HY6_016
3D structure
- PDB id
- 9HY6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome with nascent chain at linker length of 31 amino acids, with mRNA, P-site and A-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CUAAU*AGGUUAG*CAUAAG
- Length
- 18 nucleotides
- Bulged bases
- 9HY6|1|b|U|2334, 9HY6|1|b|A|2336
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9HY6|1|b|C|2295
9HY6|1|b|U|2296
9HY6|1|b|A|2297
9HY6|1|b|A|2298
9HY6|1|b|U|2299
*
9HY6|1|b|A|2317
9HY6|1|b|G|2318
9HY6|1|b|G|2319
9HY6|1|b|U|2320
9HY6|1|b|U|2321
9HY6|1|b|A|2322
9HY6|1|b|G|2323
*
9HY6|1|b|C|2332
9HY6|1|b|A|2333
9HY6|1|b|U|2334
9HY6|1|b|A|2335
9HY6|1|b|A|2336
9HY6|1|b|G|2337
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain A
- Transfer RNA; tRNA
- Chain a
- 5S ribosomal RNA; 5S rRNA
- Chain f
- Large ribosomal subunit protein uL5
- Chain o
- Large ribosomal subunit protein uL18
- Chain y
- Large ribosomal subunit protein bL27
Coloring options: