J3_9HY6_017

3D structure

PDB id

9HY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with nascent chain at linker length of 31 amino acids, with mRNA, P-site and A-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAUC*GUGAUG*CCAUUUAAAG

Length

20 nucleotides

Bulged bases

9HY6|1|b|A|2518, 9HY6|1|b|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HY6|1|b|C|2517
9HY6|1|b|A|2518
9HY6|1|b|U|2519
9HY6|1|b|C|2520
*
9HY6|1|b|G|2545
9HY6|1|b|U|2546
9HY6|1|b|G|2547
9HY6|1|b|A|2548
9HY6|1|b|U|2549
9HY6|1|b|G|2550
*
9HY6|1|b|C|2558
9HY6|1|b|C|2559
9HY6|1|b|A|2560
9HY6|1|b|U|2561
9HY6|1|b|U|2562
9HY6|1|b|U|2563
9HY6|1|b|A|2564
9HY6|1|b|A|2565
9HY6|1|b|A|2566
9HY6|1|b|G|2567

Current chains

Chain b

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain k

Large ribosomal subunit protein uL14