J3_9HYM_001

3D structure

PDB id

9HYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome with complexed filament nascent chain at length 34, with mRNA, P-site and A-site tRNAs, and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GCCGUAG*CGC*GGAAC

Length

15 nucleotides

Bulged bases

9HYM|1|a|U|14, 9HYM|1|a|A|108

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HYM|1|a|G|10
9HYM|1|a|C|11
9HYM|1|a|C|12
9HYM|1|a|G|13
9HYM|1|a|U|14
9HYM|1|a|A|15
9HYM|1|a|G|16
*
9HYM|1|a|C|68
9HYM|1|a|G|69
9HYM|1|a|C|70
*
9HYM|1|a|G|106
9HYM|1|a|G|107
9HYM|1|a|A|108
9HYM|1|a|A|109
9HYM|1|a|C|110

Current chains

Chain a

5S rRNA

Nearby chains

Chain b

Large subunit ribosomal RNA; LSU rRNA

Chain o

Large ribosomal subunit protein uL18

Chain w

Large ribosomal subunit protein bL25

Chain y

Large ribosomal subunit protein bL27