J3_9HYM_003
3D structure
- PDB id
- 9HYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of WT E.coli ribosome with complexed filament nascent chain at length 34, with mRNA, P-site and A-site tRNAs, and mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 9HYM|1|b|A|504, 9HYM|1|b|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9HYM_003 not in the Motif Atlas
- Homologous match to J3_7A0S_015
- Geometric discrepancy: 0.276
- The information below is about J3_7A0S_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
9HYM|1|b|G|30
9HYM|1|b|C|31
*
9HYM|1|b|G|474
9HYM|1|b|C|475
9HYM|1|b|G|476
9HYM|1|b|A|477
9HYM|1|b|A|478
9HYM|1|b|A|479
9HYM|1|b|A|480
9HYM|1|b|G|481
9HYM|1|b|A|482
9HYM|1|b|A|483
9HYM|1|b|C|484
*
9HYM|1|b|G|496
9HYM|1|b|A|497
9HYM|1|b|G|498
9HYM|1|b|U|499
9HYM|1|b|G|500
9HYM|1|b|A|501
9HYM|1|b|A|502
9HYM|1|b|A|503
9HYM|1|b|A|504
9HYM|1|b|A|505
9HYM|1|b|G|506
9HYM|1|b|A|507
9HYM|1|b|A|508
9HYM|1|b|C|509
9HYM|1|b|C|510
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain q
- Large ribosomal subunit protein bL20
- Chain s
- Large ribosomal subunit protein uL22
- Chain u
- Large ribosomal subunit protein uL24
Coloring options: