J3_9HYM_006
3D structure
- PDB id
- 9HYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of WT E.coli ribosome with complexed filament nascent chain at length 34, with mRNA, P-site and A-site tRNAs, and mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UGAUCUA*UGG*CAAA
- Length
- 14 nucleotides
- Bulged bases
- 9HYM|1|b|U|686, 9HYM|1|b|A|792, 9HYM|1|b|A|793
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9HYM_006 not in the Motif Atlas
- Homologous match to J3_7A0S_004
- Geometric discrepancy: 0.1679
- The information below is about J3_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.1
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
9HYM|1|b|U|683
9HYM|1|b|G|684
9HYM|1|b|A|685
9HYM|1|b|U|686
9HYM|1|b|C|687
9HYM|1|b|U|688
9HYM|1|b|A|689
*
9HYM|1|b|U|773
9HYM|1|b|G|774
9HYM|1|b|G|775
*
9HYM|1|b|C|791
9HYM|1|b|A|792
9HYM|1|b|A|793
9HYM|1|b|A|794
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 6
- Large ribosomal subunit protein bL34
- Chain c
- Large ribosomal subunit protein uL2
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