J3_9HYM_008
3D structure
- PDB id
- 9HYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of WT E.coli ribosome with complexed filament nascent chain at length 34, with mRNA, P-site and A-site tRNAs, and mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CCCAGACAGCCAGGAUG*CAUUUAAAGAAA*UCACUGGUCGAG
- Length
- 41 nucleotides
- Bulged bases
- 9HYM|1|b|A|1046, 9HYM|1|b|C|1053, 9HYM|1|b|A|1057, 9HYM|1|b|A|1103
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9HYM|1|b|C|1043
9HYM|1|b|C|1044
9HYM|1|b|C|1045
9HYM|1|b|A|1046
9HYM|1|b|G|1047
9HYM|1|b|A|1048
9HYM|1|b|C|1049
9HYM|1|b|A|1050
9HYM|1|b|G|1051
9HYM|1|b|C|1052
9HYM|1|b|C|1053
9HYM|1|b|A|1054
9HYM|1|b|G|1055
9HYM|1|b|G|1056
9HYM|1|b|A|1057
9HYM|1|b|U|1058
9HYM|1|b|G|1059
*
9HYM|1|b|C|1079
9HYM|1|b|A|1080
9HYM|1|b|U|1081
9HYM|1|b|U|1082
9HYM|1|b|U|1083
9HYM|1|b|A|1084
9HYM|1|b|A|1085
9HYM|1|b|A|1086
9HYM|1|b|G|1087
9HYM|1|b|A|1088
9HYM|1|b|A|1089
9HYM|1|b|A|1090
*
9HYM|1|b|U|1101
9HYM|1|b|C|1102
9HYM|1|b|A|1103
9HYM|1|b|C|1104
9HYM|1|b|U|1105
9HYM|1|b|G|1106
9HYM|1|b|G|1107
9HYM|1|b|U|1108
9HYM|1|b|C|1109
9HYM|1|b|G|1110
9HYM|1|b|A|1111
9HYM|1|b|G|1112
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 8
- 50S ribosomal protein L36
- Chain g
- Large ribosomal subunit protein uL6
Coloring options: