J3_9I14_002

3D structure

PDB id

9I14 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

9I14|1|L5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I14|1|L5|C|196
9I14|1|L5|A|197
9I14|1|L5|A|198
9I14|1|L5|G|199
*
9I14|1|L5|C|215
9I14|1|L5|C|216
9I14|1|L5|C|217
9I14|1|L5|A|218
9I14|1|L5|G|219
9I14|1|L5|C|220
9I14|1|L5|C|221
9I14|1|L5|C|222
9I14|1|L5|G|223
9I14|1|L5|U|224
9I14|1|L5|G|225
9I14|1|L5|G|226
9I14|1|L5|A|227
9I14|1|L5|C|228
*
9I14|1|L5|G|240
9I14|1|L5|G|241
9I14|1|L5|U|242
9I14|1|L5|A|243
9I14|1|L5|G|244

Current chains

Chain L5

LSU 28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26