J3_9I14_007

3D structure

PDB id

9I14 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

9I14|1|L5|A|1534, 9I14|1|L5|G|1641, 9I14|1|L5|A|1642

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I14|1|L5|U|1531
9I14|1|L5|G|1532
9I14|1|L5|A|1533
9I14|1|L5|A|1534
9I14|1|L5|C|1535
9I14|1|L5|U|1536
9I14|1|L5|A|1537
*
9I14|1|L5|U|1622
9I14|1|L5|A|1623
9I14|1|L5|G|1624
*
9I14|1|L5|C|1640
9I14|1|L5|G|1641
9I14|1|L5|A|1642
9I14|1|L5|A|1643

Current chains

Chain L5

LSU 28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LN

60S ribosomal protein L15

Chain Lj

Large ribosomal subunit protein eL37