J3_9I14_011

3D structure

PDB id

9I14 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

GAAG*CC(A2M)UAUC*GUC

Length

14 nucleotides

Bulged bases

9I14|1|L5|U|2788, 9I14|1|L5|A|2789, 9I14|1|L5|U|2790

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I14|1|L5|G|2402
9I14|1|L5|A|2403
9I14|1|L5|A|2404
9I14|1|L5|G|2405
*
9I14|1|L5|C|2785
9I14|1|L5|C|2786
9I14|1|L5|A2M|2787
9I14|1|L5|U|2788
9I14|1|L5|A|2789
9I14|1|L5|U|2790
9I14|1|L5|C|2791
*
9I14|1|L5|G|2800
9I14|1|L5|U|2801
9I14|1|L5|C|2802

Current chains

Chain L5

LSU 28S rRNA

Nearby chains

Chain Lg

60S ribosomal protein L34

Chain Lj

Large ribosomal subunit protein eL37

Chain Ll

60S ribosomal protein L39