J3_9I14_012

3D structure

PDB id

9I14 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

UCGGUC*GGAGU*AA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I14|1|L5|U|2440
9I14|1|L5|C|2441
9I14|1|L5|G|2442
9I14|1|L5|G|2443
9I14|1|L5|U|2444
9I14|1|L5|C|2445
*
9I14|1|L5|G|2515
9I14|1|L5|G|2516
9I14|1|L5|A|2517
9I14|1|L5|G|2518
9I14|1|L5|U|2519
*
9I14|1|L5|A|2536
9I14|1|L5|A|2537

Current chains

Chain L5

LSU 28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LX

60S ribosomal protein L23a

Chain Lg

60S ribosomal protein L34

Chain Lk

60S ribosomal protein L38

Chain Ll

60S ribosomal protein L39