J3_9I14_016

3D structure

PDB id

9I14 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I14|1|L5|A|2598
9I14|1|L5|G|2599
9I14|1|L5|A|2600
9I14|1|L5|A|2601
9I14|1|L5|G|2602
*
9I14|1|L5|C|2737
9I14|1|L5|C|2738
*
9I14|1|L5|G|2742
9I14|1|L5|A|2743
9I14|1|L5|A|2744
9I14|1|L5|A|2745
9I14|1|L5|A|2746
9I14|1|L5|U|2747

Current chains

Chain L5

LSU 28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lg

60S ribosomal protein L34

Chain Lp

60S ribosomal protein L37a