J3_9I14_020

3D structure

PDB id

9I14 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

9I14|1|L5|A|4464, 9I14|1|L5|U|4465

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9I14_020 not in the Motif Atlas

Homologous match to J3_9H3G_024

Geometric discrepancy: 0.0847

The information below is about J3_9H3G_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44047.4

Basepair signature

cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F

Number of instances in this motif group

6

Unit IDs

9I14|1|L5|U|4463
9I14|1|L5|A|4464
9I14|1|L5|U|4465
9I14|1|L5|C|4466
*
9I14|1|L5|G|4491
9I14|1|L5|U|4492
9I14|1|L5|U|4493
*
9I14|1|L5|A|4507
9I14|1|L5|C|4508
9I14|1|L5|U|4509
9I14|1|L5|A|4510
9I14|1|L5|A|4511
9I14|1|L5|U|4512
9I14|1|L5|A|4513

Current chains

Chain L5

LSU 28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L13a

Chain LV

60S ribosomal protein L23