J3_9I14_021

3D structure

PDB id

9I14 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

9I14|1|L5|U|4882, 9I14|1|L5|A|4938, 9I14|1|L5|C|4940, 9I14|1|L5|A|4943, 9I14|1|L5|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I14|1|L5|G|4751
9I14|1|L5|U|4752
9I14|1|L5|U|4753
9I14|1|L5|G|4754
*
9I14|1|L5|C|4879
9I14|1|L5|C|4880
9I14|1|L5|U|4881
9I14|1|L5|U|4882
9I14|1|L5|C|4883
*
9I14|1|L5|G|4936
9I14|1|L5|C|4937
9I14|1|L5|A|4938
9I14|1|L5|C|4939
9I14|1|L5|C|4940
9I14|1|L5|G|4941
9I14|1|L5|C|4942
9I14|1|L5|A|4943
9I14|1|L5|C|4944
9I14|1|L5|G|4945
9I14|1|L5|U|4946
9I14|1|L5|U|4947
9I14|1|L5|C|4948

Current chains

Chain L5

LSU 28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a