J3_9I14_029

3D structure

PDB id

9I14 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

AUUC*GGACCAGAG*CAUUU

Length

18 nucleotides

Bulged bases

9I14|1|S2|G|991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I14|1|S2|A|938
9I14|1|S2|U|939
9I14|1|S2|U|940
9I14|1|S2|C|941
*
9I14|1|S2|G|985
9I14|1|S2|G|986
9I14|1|S2|A|987
9I14|1|S2|C|988
9I14|1|S2|C|989
9I14|1|S2|A|990
9I14|1|S2|G|991
9I14|1|S2|A|992
9I14|1|S2|G|993
*
9I14|1|S2|C|1000
9I14|1|S2|A|1001
9I14|1|S2|U|1002
9I14|1|S2|U|1003
9I14|1|S2|U|1004

Current chains

Chain S2

SSU 18S rRNA

Nearby chains

Chain Lp

60S ribosomal protein L37a

Chain SB

40S ribosomal protein S3a

Chain SN

40S ribosomal protein S13

Chain SO

40S ribosomal protein S14

Chain Sa

40S ribosomal protein S26