J3_9I14_032
3D structure
- PDB id
- 9I14 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF HCT15 POLYSOMES IN HYBRID-PRE STATE
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.34 Å
Loop
- Sequence
- UGGA*UAC*G(G7M)AA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: G7M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9I14_032 not in the Motif Atlas
- Homologous match to J3_9PN5_036
- Geometric discrepancy: 0.091
- The information below is about J3_9PN5_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44359.4
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9I14|1|S2|U|1225
9I14|1|S2|G|1226
9I14|1|S2|G|1227
9I14|1|S2|A|1228
*
9I14|1|S2|U|1530
9I14|1|S2|A|1531
9I14|1|S2|C|1532
*
9I14|1|S2|G|1638
9I14|1|S2|G7M|1639
9I14|1|S2|A|1640
9I14|1|S2|A|1641
Current chains
- Chain S2
- SSU 18S rRNA
Nearby chains
- Chain B4
- Transfer RNA; tRNA
- Chain SF
- 40S ribosomal protein S5
- Chain SQ
- 40S ribosomal protein S16
- Chain SS
- 40S ribosomal protein S18
- Chain ST
- Small ribosomal subunit protein eS19
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