J3_9I2D_007

3D structure

PDB id

9I2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with 10 amino acid ARF1-linker

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

9I2D|1|L5|G|959, 9I2D|1|L5|C|962, 9I2D|1|L5|G|965, 9I2D|1|L5|C|967, 9I2D|1|L5|C|968, 9I2D|1|L5|C|969, 9I2D|1|L5|U|971, 9I2D|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I2D|1|L5|C|712
9I2D|1|L5|C|713
*
9I2D|1|L5|G|955
9I2D|1|L5|A|956
9I2D|1|L5|G|957
9I2D|1|L5|G|958
9I2D|1|L5|G|959
9I2D|1|L5|A|960
9I2D|1|L5|G|961
9I2D|1|L5|C|962
9I2D|1|L5|G|963
9I2D|1|L5|A|964
9I2D|1|L5|G|965
9I2D|1|L5|A|966
9I2D|1|L5|C|967
9I2D|1|L5|C|968
9I2D|1|L5|C|969
9I2D|1|L5|G|970
9I2D|1|L5|U|971
9I2D|1|L5|C|972
9I2D|1|L5|G|973
9I2D|1|L5|C|974
9I2D|1|L5|C|975
9I2D|1|L5|G|976
*
9I2D|1|L5|C|1278
9I2D|1|L5|A|1279
9I2D|1|L5|C|1280
9I2D|1|L5|G|1281
9I2D|1|L5|G|1282
9I2D|1|L5|G|1283
9I2D|1|L5|G|1284

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

Large ribosomal subunit protein eL6

Chain LF

Large ribosomal subunit protein uL30

Chain Le

60S ribosomal protein L32