J3_9I2D_021

3D structure

PDB id

9I2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with 10 amino acid ARF1-linker

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GUC*GCCUCACGAUCC*GGUGUC

Length

21 nucleotides

Bulged bases

9I2D|1|L5|C|4337, 9I2D|1|L5|U|4374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I2D|1|L5|G|4228
9I2D|1|L5|U|4229
9I2D|1|L5|C|4230
*
9I2D|1|L5|G|4331
9I2D|1|L5|C|4332
9I2D|1|L5|C|4333
9I2D|1|L5|U|4334
9I2D|1|L5|C|4335
9I2D|1|L5|A|4336
9I2D|1|L5|C|4337
9I2D|1|L5|G|4338
9I2D|1|L5|A|4339
9I2D|1|L5|U|4340
9I2D|1|L5|C|4341
9I2D|1|L5|C|4342
*
9I2D|1|L5|G|4370
9I2D|1|L5|G|4371
9I2D|1|L5|U|4372
9I2D|1|L5|G|4373
9I2D|1|L5|U|4374
9I2D|1|L5|C|4375

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LQ

60S ribosomal protein L18

Chain LT

60S ribosomal protein L21

Chain La

60S ribosomal protein L27a

Chain Lo

60S ribosomal protein L36a