J3_9I2D_022

3D structure

PDB id

9I2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with 10 amino acid ARF1-linker

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CUC*GAG*CAAAAG

Length

12 nucleotides

Bulged bases

9I2D|1|L5|A|4280, 9I2D|1|L5|A|4282

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I2D|1|L5|C|4241
9I2D|1|L5|U|4242
9I2D|1|L5|C|4243
*
9I2D|1|L5|G|4267
9I2D|1|L5|A|4268
9I2D|1|L5|G|4269
*
9I2D|1|L5|C|4278
9I2D|1|L5|A|4279
9I2D|1|L5|A|4280
9I2D|1|L5|A|4281
9I2D|1|L5|A|4282
9I2D|1|L5|G|4283

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CP

Transfer RNA; tRNA

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

60S ribosomal protein L5

Chain LJ

60S ribosomal protein L11

Chain LT

60S ribosomal protein L21