J3_9I2D_025

3D structure

PDB id

9I2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with 10 amino acid ARF1-linker

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CAU*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

9I2D|1|L5|U|4989, 9I2D|1|L5|C|4990

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I2D|1|L5|C|4970
9I2D|1|L5|A|4971
9I2D|1|L5|U|4972
*
9I2D|1|L5|G|4986
9I2D|1|L5|C|4987
9I2D|1|L5|U|4988
9I2D|1|L5|U|4989
9I2D|1|L5|C|4990
9I2D|1|L5|U|4991
*
9I2D|1|L5|A|5060
9I2D|1|L5|A|5061
9I2D|1|L5|G|5062
9I2D|1|L5|G|5063

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LP

60S ribosomal protein L17

Chain Ld

60S ribosomal protein L31