J3_9I2E_002

3D structure

PDB id

9I2E (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human ribosome (combined translational states)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

9I2E|1|L5|C|216, 9I2E|1|L5|C|217, 9I2E|1|L5|A|218, 9I2E|1|L5|G|219, 9I2E|1|L5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I2E|1|L5|C|196
9I2E|1|L5|A|197
9I2E|1|L5|A|198
9I2E|1|L5|G|199
*
9I2E|1|L5|C|215
9I2E|1|L5|C|216
9I2E|1|L5|C|217
9I2E|1|L5|A|218
9I2E|1|L5|G|219
9I2E|1|L5|C|220
9I2E|1|L5|C|221
9I2E|1|L5|C|222
9I2E|1|L5|G|223
9I2E|1|L5|U|224
9I2E|1|L5|G|225
9I2E|1|L5|G|226
9I2E|1|L5|A|227
9I2E|1|L5|C|228
*
9I2E|1|L5|G|240
9I2E|1|L5|G|241
9I2E|1|L5|U|242
9I2E|1|L5|A|243
9I2E|1|L5|G|244

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26