J3_9I2E_007

3D structure

PDB id

9I2E (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human ribosome (combined translational states)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

9I2E|1|L5|G|959, 9I2E|1|L5|G|965, 9I2E|1|L5|C|967, 9I2E|1|L5|C|968, 9I2E|1|L5|C|969, 9I2E|1|L5|U|971, 9I2E|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I2E|1|L5|C|712
9I2E|1|L5|C|713
*
9I2E|1|L5|G|955
9I2E|1|L5|A|956
9I2E|1|L5|G|957
9I2E|1|L5|G|958
9I2E|1|L5|G|959
9I2E|1|L5|A|960
9I2E|1|L5|G|961
9I2E|1|L5|C|962
9I2E|1|L5|G|963
9I2E|1|L5|A|964
9I2E|1|L5|G|965
9I2E|1|L5|A|966
9I2E|1|L5|C|967
9I2E|1|L5|C|968
9I2E|1|L5|C|969
9I2E|1|L5|G|970
9I2E|1|L5|U|971
9I2E|1|L5|C|972
9I2E|1|L5|G|973
9I2E|1|L5|C|974
9I2E|1|L5|C|975
9I2E|1|L5|G|976
*
9I2E|1|L5|C|1278
9I2E|1|L5|A|1279
9I2E|1|L5|C|1280
9I2E|1|L5|G|1281
9I2E|1|L5|G|1282
9I2E|1|L5|G|1283
9I2E|1|L5|G|1284

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

Large ribosomal subunit protein eL6

Chain LF

Large ribosomal subunit protein uL30

Chain Le

60S ribosomal protein L32