J3_9I89_001

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9I89_001 not in the Motif Atlas

Geometric match to J3_8B0X_014

Geometric discrepancy: 0.0761

The information below is about J3_8B0X_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

11

Unit IDs

9I89|1|A|G|30
9I89|1|A|C|31
*
9I89|1|A|G|520
9I89|1|A|U|521
9I89|1|A|G|522
9I89|1|A|A|523
9I89|1|A|A|524
9I89|1|A|A|525
9I89|1|A|A|526
9I89|1|A|G|527
*
9I89|1|A|C|554
9I89|1|A|C|555

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL24

Chain T

Large ribosomal subunit protein bL20