J3_9I89_022

3D structure

PDB id

9I89 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GCCUAAU*AGGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

9I89|1|a|C|49, 9I89|1|a|A|51, 9I89|1|a|A|52

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9I89_022 not in the Motif Atlas

Homologous match to J3_6CZR_058

Geometric discrepancy: 0.1279

The information below is about J3_6CZR_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.3

Basepair signature

cWW-cWW-cSW-cWS-tHW-cWW-cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

9I89|1|a|G|47
9I89|1|a|C|48
9I89|1|a|C|49
9I89|1|a|U|50
9I89|1|a|A|51
9I89|1|a|A|52
9I89|1|a|U|53
*
9I89|1|a|A|367
9I89|1|a|G|368
9I89|1|a|G|369
9I89|1|a|G|370
9I89|1|a|A|371
9I89|1|a|A|372
9I89|1|a|U|373
9I89|1|a|C|374
9I89|1|a|U|375
*
9I89|1|a|A|401
9I89|1|a|G|402
9I89|1|a|C|403

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain m

Small ribosomal subunit protein uS12

Chain q

Small ribosomal subunit protein bS16