J3_9I89_028
3D structure
- PDB id
- 9I89 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the A2058-dimethylated Staphylococcus aureus 70S ribosome complexed with clincelin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.01 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9I89_028 not in the Motif Atlas
- Homologous match to J3_6CZR_019
- Geometric discrepancy: 0.1606
- The information below is about J3_6CZR_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9I89|1|a|U|953
9I89|1|a|G|954
9I89|1|a|G|955
9I89|1|a|A|956
*
9I89|1|a|U|1246
9I89|1|a|A|1247
9I89|1|a|C|1248
*
9I89|1|a|G|1348
9I89|1|a|G|1349
9I89|1|a|A|1350
9I89|1|a|A|1351
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain D
- Transfer RNA; tRNA
- Chain j
- Small ribosomal subunit protein uS9
- Chain n
- Small ribosomal subunit protein uS13
Coloring options: