3D structure

PDB id
9IOT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
CAUC*GUA*UUUAAAG
Length
14 nucleotides
Bulged bases
9IOT|1|A|A|2518, 9IOT|1|A|U|2519
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9IOT_016 not in the Motif Atlas
Geometric match to J3_5J7L_046
Geometric discrepancy: 0.0696
The information below is about J3_5J7L_046
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32601.5
Basepair signature
cWW-tWH-cHW-F-cWW-tSS-F-cWW
Number of instances in this motif group
4

Unit IDs

9IOT|1|A|C|2517
9IOT|1|A|A|2518
9IOT|1|A|U|2519
9IOT|1|A|C|2520
*
9IOT|1|A|G|2545
9IOT|1|A|U|2546
9IOT|1|A|A|2547
*
9IOT|1|A|U|2561
9IOT|1|A|U|2562
9IOT|1|A|U|2563
9IOT|1|A|A|2564
9IOT|1|A|A|2565
9IOT|1|A|A|2566
9IOT|1|A|G|2567

Current chains

Chain A
23S rRNA

Nearby chains

Chain E
50S ribosomal protein L3
Chain M
50S ribosomal protein L14

Coloring options:


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