J3_9IOT_019
3D structure
- PDB id
- 9IOT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Escherichia coli hibernating ribosome with RNase I mutant
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GCAGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 9IOT|1|B|U|14, 9IOT|1|B|A|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9IOT_019 not in the Motif Atlas
- Geometric match to J3_5J7L_049
- Geometric discrepancy: 0.0727
- The information below is about J3_5J7L_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89095.1
- Basepair signature
- cWW-F-F-F-tHS-F-cWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
9IOT|1|B|G|10
9IOT|1|B|C|11
9IOT|1|B|A|12
9IOT|1|B|G|13
9IOT|1|B|U|14
9IOT|1|B|A|15
9IOT|1|B|G|16
*
9IOT|1|B|C|68
9IOT|1|B|G|69
9IOT|1|B|C|70
*
9IOT|1|B|G|106
9IOT|1|B|G|107
9IOT|1|B|A|108
9IOT|1|B|A|109
9IOT|1|B|C|110
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain Q
- Large ribosomal subunit protein uL18
- Chain X
- 50S ribosomal protein L25
- Chain Y
- Large ribosomal subunit protein bL27
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