J3_9IWF_004

3D structure

PDB id

9IWF (explore in PDB, NAKB, or RNA 3D Hub)

Description

crystal structure of P. beijingensis xanthine-II riboswitch in complex with xanthine

Experimental method

X-RAY DIFFRACTION

Resolution

2.06 Å

Loop

Sequence

AUAAG*CGUUUCGACCAG*CCCAGGCU

Length

25 nucleotides

Bulged bases

9IWF|1|B|U|34, 9IWF|1|B|C|60

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_61367.1

Basepair signature

cWW-cWS-cWW-F-tWS-F-tHW-cWW-cWW-F-cWW-cWW-tWW-F-F

Number of instances in this motif group

1

Unit IDs

9IWF|1|B|A|7
9IWF|1|B|U|8
9IWF|1|B|A|9
9IWF|1|B|A|10
9IWF|1|B|G|11
*
9IWF|1|B|C|31
9IWF|1|B|G|32
9IWF|1|B|U|33
9IWF|1|B|U|34
9IWF|1|B|U|35
9IWF|1|B|C|36
9IWF|1|B|G|37
9IWF|1|B|A|38
9IWF|1|B|C|39
9IWF|1|B|C|40
9IWF|1|B|A|41
9IWF|1|B|G|42
*
9IWF|1|B|C|58
9IWF|1|B|C|59
9IWF|1|B|C|60
9IWF|1|B|A|61
9IWF|1|B|G|62
9IWF|1|B|G|63
9IWF|1|B|C|64
9IWF|1|B|U|65

Current chains

Chain B

P. beijingensis xanthine-II riboswitch (70-MER)

Nearby chains