J3_9J1M_001
3D structure
- PDB id
- 9J1M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- KU13-bond Mycobacterium tuberculosis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- GC*GUGAAAAG*CC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9J1M_001 not in the Motif Atlas
- Geometric match to J3_9DFE_001
- Geometric discrepancy: 0.0705
- The information below is about J3_9DFE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_68715.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 10
Unit IDs
9J1M|1|A|G|30
9J1M|1|A|C|31
*
9J1M|1|A|G|563
9J1M|1|A|U|564
9J1M|1|A|G|565
9J1M|1|A|A|566
9J1M|1|A|A|567
9J1M|1|A|A|568
9J1M|1|A|A|569
9J1M|1|A|G|570
*
9J1M|1|A|C|597
9J1M|1|A|C|598
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain Q
- Large ribosomal subunit protein bL20
- Chain S
- Large ribosomal subunit protein uL22
- Chain U
- Large ribosomal subunit protein uL24
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