3D structure

PDB id
9J1M (explore in PDB, NAKB, or RNA 3D Hub)
Description
KU13-bond Mycobacterium tuberculosis 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.33 Å

Loop

Sequence
AC*GAUAUGC*GAUUU
Length
14 nucleotides
Bulged bases
9J1M|1|A|U|72, 9J1M|1|A|U|74
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_9J1M_004 not in the Motif Atlas
Geometric match to J3_9DFE_004
Geometric discrepancy: 0.0664
The information below is about J3_9DFE_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_01004.1
Basepair signature
cWW-cWW-F-F-F-cWW-F-cWW
Number of instances in this motif group
10

Unit IDs

9J1M|1|A|A|56
9J1M|1|A|C|57
*
9J1M|1|A|G|70
9J1M|1|A|A|71
9J1M|1|A|U|72
9J1M|1|A|A|73
9J1M|1|A|U|74
9J1M|1|A|G|75
9J1M|1|A|C|76
*
9J1M|1|A|G|110
9J1M|1|A|A|111
9J1M|1|A|U|112
9J1M|1|A|U|113
9J1M|1|A|U|114

Current chains

Chain A
23S rRNA

Nearby chains

Chain 2
Large ribosomal subunit protein bL34
Chain T
Large ribosomal subunit protein uL23
Chain Y
Large ribosomal subunit protein uL29

Coloring options:


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