J3_9J1M_008
3D structure
- PDB id
- 9J1M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- KU13-bond Mycobacterium tuberculosis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- UGAUCUA*UAG*CAAA
- Length
- 14 nucleotides
- Bulged bases
- 9J1M|1|A|U|815, 9J1M|1|A|A|921, 9J1M|1|A|A|922
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9J1M_008 not in the Motif Atlas
- Geometric match to J3_4V9F_002
- Geometric discrepancy: 0.0867
- The information below is about J3_4V9F_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.1
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
9J1M|1|A|U|812
9J1M|1|A|G|813
9J1M|1|A|A|814
9J1M|1|A|U|815
9J1M|1|A|C|816
9J1M|1|A|U|817
9J1M|1|A|A|818
*
9J1M|1|A|U|902
9J1M|1|A|A|903
9J1M|1|A|G|904
*
9J1M|1|A|C|920
9J1M|1|A|A|921
9J1M|1|A|A|922
9J1M|1|A|A|923
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein bL34
- Chain C
- Large ribosomal subunit protein uL2
Coloring options: