J3_9J1M_014

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

UGACG*CC*GAAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9J1M_014 not in the Motif Atlas

Geometric match to J3_4V9F_017

Geometric discrepancy: 0.2534

The information below is about J3_4V9F_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

9J1M|1|A|U|1663
9J1M|1|A|G|1664
9J1M|1|A|A|1665
9J1M|1|A|C|1666
9J1M|1|A|G|1667
*
9J1M|1|A|C|1801
9J1M|1|A|C|1802
*
9J1M|1|A|G|1805
9J1M|1|A|A|1806
9J1M|1|A|A|1807
9J1M|1|A|A|1808
9J1M|1|A|A|1809
9J1M|1|A|G|1810

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2