J3_9J1M_016
3D structure
- PDB id
- 9J1M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- KU13-bond Mycobacterium tuberculosis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- GCC*GAUUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 9J1M|1|A|A|2626, 9J1M|1|A|U|2628, 9J1M|1|A|A|2664
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9J1M_016 not in the Motif Atlas
- Geometric match to J3_5J7L_070
- Geometric discrepancy: 0.1134
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9J1M|1|A|G|2520
9J1M|1|A|C|2521
9J1M|1|A|C|2522
*
9J1M|1|A|G|2622
9J1M|1|A|A|2623
9J1M|1|A|U|2624
9J1M|1|A|U|2625
9J1M|1|A|A|2626
9J1M|1|A|G|2627
9J1M|1|A|U|2628
9J1M|1|A|G|2629
9J1M|1|A|A|2630
9J1M|1|A|U|2631
9J1M|1|A|C|2632
9J1M|1|A|C|2633
*
9J1M|1|A|G|2659
9J1M|1|A|C|2660
9J1M|1|A|U|2661
9J1M|1|A|C|2662
9J1M|1|A|A|2663
9J1M|1|A|A|2664
9J1M|1|A|C|2665
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein bL33A
- Chain 3
- Large ribosomal subunit protein bL35
- Chain L
- Large ribosomal subunit protein uL15
- Chain W
- Large ribosomal subunit protein bL27
Coloring options: