J3_9J1M_017
3D structure
- PDB id
- 9J1M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- KU13-bond Mycobacterium tuberculosis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- CUC*GAG*CACAAG
- Length
- 12 nucleotides
- Bulged bases
- 9J1M|1|A|C|2572, 9J1M|1|A|A|2574
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9J1M_017 not in the Motif Atlas
- Geometric match to J3_4V9F_008
- Geometric discrepancy: 0.1572
- The information below is about J3_4V9F_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.1
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
9J1M|1|A|C|2533
9J1M|1|A|U|2534
9J1M|1|A|C|2535
*
9J1M|1|A|G|2559
9J1M|1|A|A|2560
9J1M|1|A|G|2561
*
9J1M|1|A|C|2570
9J1M|1|A|A|2571
9J1M|1|A|C|2572
9J1M|1|A|A|2573
9J1M|1|A|A|2574
9J1M|1|A|G|2575
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain F
- Large ribosomal subunit protein uL5
- Chain O
- Large ribosomal subunit protein uL18
- Chain W
- Large ribosomal subunit protein bL27
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